Date of Award

6-2024

Degree Name

MS in Agriculture - Crop Science

Department/Program

Horticulture and Crop Science

College

College of Agriculture, Food, and Environmental Sciences

Advisor

Shunping Ding

Advisor Department

Horticulture and Crop Science

Advisor College

College of Agriculture, Food, and Environmental Sciences

Abstract

Downy mildew has been a potentially devastating constraint to crop production within the Brassicaceae family worldwide (CABI, 2022) and on the Central Coast of California (Smukler, et al, 2008; Koike, et al. 2007). Downy mildew is a foliar disease, caused by the pathogens in the Hyaloperonospora genus on plants within the Brassicaceae family (Goker, et al, 2009). Downy mildew is a disease that is common in region of the world with Coastal climates that provide humidity and moderate temperatures (Sarahan, et al, 2017). Crops within the Brassicaceae family maintain a predominant role in agricultural systems worldwide (Cartea, et al, 2011) and on the Central Coast of California, in Monterey, San Luis Obispo, Santa Cruz, San Benito, and Ventura Counties (Hidalgo, et al, 2022; Settevendemie, et al, 2022; Sanford, et al, 2022; Griffin, et al, 2022; Chang, et al, 2022; Williams, et al, 2022). The crop production within the Brassicaceae family includes broccoli, cabbage, and cauliflower, and the spring mix production of wild arugula, cultivated arugula, and baby kale. In the first study, an in-lab screening of wild arugula (Diplotaxis tenuifolia) for downy mildew resistance was conducted to identify accessions that contain potential resources of resistance to Hyaloperonospora diplotaxidis. The germplasm of 199 wild arugula accessions was grown out under greenhouse conditions and inoculated with a v single isolate of H. diplotaxidis. A subset of 40 accessions of wild arugula were further inoculated with an additional three isolates of H. diplotaxidis and the ten most resistant accessions were selected for further inoculations. The inoculations of the final subset of ten accessions with the same three isolates were replicated an additional two times. When a factorial ANOVA was conducted to test the interaction between the isolate and accession used, it was found that the impact of the accession on disease incidence was independent from the isolate (P=0.993). Three accessions, 185, 79, and 17 were identified as a potential source of resistance to the isolates utilized in this study, for maintaining a disease incidence below 1%. To compare the results found in the in-lab resistance screening, a field trial was conducted with a subset of wild arugula accessions with diverse reactions to downy mildew. When a regression was conducted comparing the disease incidence under field and lab conditions, the R2 value was found to be 0.37. A second study was conducted to characterize the genetic, morphological, and host range diversity of downy mildew causing pathogens in the Hyaloperonospora genus of hosts in the Brassicaceae family. An isolate collection of approximately 40 isolates of Hyaloperonospora spp. was established and the phylogenetic relationships of these isolates were analyzed by creating two phylogenetic trees using their cox2 mtDNA and ITS rDNA sequences. The H. brassicae and H. diplotaxidis isolates from this study formed separate monophyletic groups in both the cox2 mtDNA and ITS rDNA phylogenetic analyses. When the host range of H. brassicae and H. diplotaxidis were characterized by inoculating a genetically and morphologically diverse set of four host plant species, the H. brassicae and H. diplotaxidis were found to have distinct host ranges. The H. brassicae isolate was found to be parasitic of all B. oleracea morphotypes including broccoli, cabbage, kale, kohlrabi, and ornamental cabbage. The H. diplotaxidis isolate was found to only be parasitic on wild arugula, not cultivated arugula, wild mustard, or any of the B. oleracea morphotypes. The difference between sporangia of H. brassicae and H. diplotaxidis were found to be statistically significant, where the sporangia of H. brassicae were nearly circular and the sporangia of H. diplotaxidis were closer to an oval.

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